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Plant Transcription
Factor Database
v4.0
Previous version:
v3.0
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Home BLAST Prediction RegMap ATRM Download Help About Links |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0100s0390.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | TALE | ||||||||
Protein Properties | Length: 338aa MW: 38409.1 Da PI: 6.2356 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 22.9 | 1.5e-07 | 288 | 320 | 22 | 54 |
SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 22 nrypsaeereeLAkklgLterqVkvWFqNrRak 54 +yp++e++++L +++gL+ +q+ +WF N+R + SapurV1A.0100s0390.1.p 288 WPYPTEEDKARLVQETGLQLKQINNWFINQRKR 320 59*****************************87 PP | |||||||
2 | ELK | 22.5 | 2.7e-08 | 241 | 262 | 1 | 22 |
ELK 1 ELKhqLlrKYsgyLgsLkqEFs 22 ELKh+L++ Y+ +++++++E++ SapurV1A.0100s0390.1.p 241 ELKHELKQDYKDKIVDIREEIL 262 9*******************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01255 | 2.3E-16 | 76 | 120 | IPR005540 | KNOX1 |
Pfam | PF03790 | 1.7E-16 | 78 | 119 | IPR005540 | KNOX1 |
SMART | SM01256 | 2.8E-26 | 129 | 184 | IPR005541 | KNOX2 |
Pfam | PF03791 | 1.0E-18 | 133 | 183 | IPR005541 | KNOX2 |
SMART | SM01188 | 0.0042 | 241 | 262 | IPR005539 | ELK domain |
PROSITE profile | PS51213 | 9.865 | 241 | 261 | IPR005539 | ELK domain |
PROSITE profile | PS50071 | 11.677 | 261 | 324 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 5.56E-16 | 263 | 325 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 6.0E-11 | 263 | 328 | IPR001356 | Homeobox domain |
CDD | cd00086 | 7.77E-11 | 264 | 323 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 5.4E-25 | 268 | 324 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 1.4E-17 | 281 | 320 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 338 aa Download sequence Send to blast |
MAFRDHQHIP QEMAFQLPHH HLSASPSTGP TWLSNAVLRR HDDVLTQTRV EKPENNTNNG 60 SEEELIDSVS DDWERAKCKA EILGHPIYEQ LLAAHVACLR IATPVDQLAR IDTQLAQSQD 120 VVAKYSGVGR SHVVEEKELD QFMTHYVLLL CSFKDQLQQH VRVHAMEAVM ACWELEQSLQ 180 SLTGVSPGEG TGSTMSDDDD DQAESDANLY DGNLDGLDTM GFGPLVPSEA ERSLMERVRK 240 ELKHELKQDY KDKIVDIREE ILRKRRAGKL PGDTTSLLKA WWQTHSKWPY PTEEDKARLV 300 QETGLQLKQI NNWFINQRKR NWHSSPSGST SKSKRKK* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 317 | 336 | RKRNWHSSPSGSTSKSKRKK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KP769999 | 0.0 | KP769999.1 Populus tomentosa Homeobox protein knotted-1-like 3 (Potri.006G190000) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002309315.2 | 0.0 | hypothetical protein POPTR_0006s20440g | ||||
Swissprot | P48000 | 1e-163 | KNAT3_ARATH; Homeobox protein knotted-1-like 3 | ||||
TrEMBL | B9HAN9 | 0.0 | B9HAN9_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0018s12200.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1017 | 34 | 108 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G25220.1 | 1e-155 | KNOTTED1-like homeobox gene 3 |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0100s0390.1.p |